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Henry Garner [Henry Garner] - Clojure for Data Science

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Henry Garner [Henry Garner] Clojure for Data Science

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Statistics, big data, and machine learning for Clojure programmers

About This Book

  • Write code using Clojure to harness the power of your data
  • Discover the libraries and frameworks that will help you succeed
  • A practical guide to understanding how the Clojure programming language can be used to derive insights from data

Who This Book Is For

This book is aimed at developers who are already productive in Clojure but who are overwhelmed by the breadth and depth of understanding required to be effective in the field of data science. Whether youre tasked with delivering a specific analytics project or simply suspect that you could be deriving more value from your data, this book will inspire you with the opportunitiesand inform you of the risksthat exist in data of all shapes and sizes.

What You Will Learn

  • Perform hypothesis testing and understand feature selection and statistical significance to interpret your results with confidence
  • Implement the core machine learning techniques of regression, classification, clustering and recommendation
  • Understand the importance of the value of simple statistics and distributions in exploratory data analysis
  • Scale algorithms to web-sized datasets efficiently using distributed programming models on Hadoop and Spark
  • Apply suitable analytic approaches for text, graph, and time series data
  • Interpret the terminology that you will encounter in technical papers
  • Import libraries from other JVM languages such as Java and Scala
  • Communicate your findings clearly and convincingly to nontechnical colleagues

In Detail

The term data science has been widely used to define this new profession that is expected to interpret vast datasets and translate them to improved decision-making and performance. Clojure is a powerful language that combines the interactivity of a scripting language with the speed of a compiled language. Together with its rich ecosystem of native libraries and an extremely simple and consistent functional approach to data manipulation, which maps closely to mathematical formula, it is an ideal, practical, and flexible language to meet a data scientists diverse needs.

Taking you on a journey from simple summary statistics to sophisticated machine learning algorithms, this book shows how the Clojure programming language can be used to derive insights from data. Data scientists often forge a novel path, and youll see how to make use of Clojures Java interoperability capabilities to access libraries such as Mahout and Mllib for which Clojure wrappers dont yet exist. Even seasoned Clojure developers will develop a deeper appreciation for their languages flexibility!

Youll learn how to apply statistical thinking to your own data and use Clojure to explore, analyze, and visualize it in a technically and statistically robust way. You can also use Incanter for local data processing and ClojureScript to present interactive visualisations and understand how distributed platforms such as Hadoop sand Sparks MapReduce and GraphXs BSP solve the challenges of data analysis at scale, and how to explain algorithms using those programming models.

Above all, by following the explanations in this book, youll learn not just how to be effective using the current state-of-the-art methods in data science, but why such methods work so that you can continue to be productive as the field evolves into the future.

Style and approach

This is a practical guide to data science that teaches theory by example through the libraries and frameworks accessible from the Clojure programming language.

Downloading the example code for this book. You can download the example code files for all Packt books you have purchased from your account at http://www.PacktPub.com. If you purchased this book elsewhere, you can visit http://www.PacktPub.com/support and register to have the files e-mailed directly to you.

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Index
A
  • A* algorithm
    • URL /
  • Acbracad library
    • URL /
  • AcmeContent
    • about /
    • sample code /
  • acyclic /
  • Adaptive Boosting (AdaBoost) /
  • Akaike Information Criterion (AIC)
    • models, identifying /
    • about /
  • ALS
    • movie recommendations /
    • using, with Spark /
    • using, with MLlib /
    • used, for making predictions /
    • evaluating /
  • Anscombe's Quartet /
  • Apache Commons Math
    • about /
    • URL /
    • used, for Nelder-Mead optimization /
  • ARMA model order
    • determining, with ACF and PACF /
  • autocorrelation function (ACF)
    • about /
    • ARMA model order, determining /
    • plotting, of airline data /
  • autocovariance
    • about /
  • autoregressive (AR) models
    • about /
    • autocorrelation, determining /
    • combining, with Moving Average (MA) models /
  • Autoregressive Integrated Moving Average (ARIMA) model
    • about /
B
  • B1
    • about /
    • URL /
  • bag-of-words /
  • bagging
    • about /
  • balanced F-score /
  • batch gradient descent
    • about /
  • Bayesian view /
  • Bayes theorem
    • about /
    • with multiple predictors /
  • bias
    • about /
    • high bias, addressing /
  • bias term /
  • big data
    • code, downloading /
    • example code, URL /
    • inspecting /
    • records, counting /
  • bigrams
    • about /
  • bimodal
    • about /
  • binning
    • about /
  • binomial distribution
    • about /
  • bipartite /
  • bivariate linear regression /
  • Bloom filters
    • used, for testing large sets membership /
  • Bonferroni correction
    • about /
  • boosting
    • about /
  • bounce
    • about /
  • box and whisker plots
    • about /
  • breadth-first search /
C
  • C4.5 algorithm /
  • categorical variables /
  • central limit theorem /
    • about /
  • Chi-squared multiple significance testing
    • about /
    • categories, visualizing /
    • chi-squared test /
    • chi-squared statistic /
  • chi-squared statistic /
  • chi-squared test /
  • classifier
    • data /
    • data, inspecting /
    • relative risk and odds, comparing with /
    • saving, to file /
  • clj-ml
    • classification with /
    • URL /
    • data, loading with /
    • decision tree, building /
  • clj-time library
    • URL /
  • clojure-opennlp library
    • URL /
  • Clojure libraries
    • URL /
  • Clojure library succession
    • URL /
  • Clojure library Tesser
    • URL /
  • Clojure reducers library
    • URL /
    • about /
    • parallel folds /
    • parallel folds with /
    • large files, loading with iota /
    • reducers processing pipeline, creating /
    • curried reductions, with reducers /
    • statistical folds /
    • associativity /
    • mean calculating, fold used /
    • variance calculating, fold used /
  • cluster evaluation, measures
    • about /
    • inter-cluster density /
    • intra-cluster density /
    • root mean square error, calculating with Parkour /
    • clustered points and centroids, loading /
    • cluster RMSE, calculating /
    • optimal k, determining with elbow method /
    • optimal k, determining with Dunn index /
    • optimal k, determining with Davies-Bouldin index /
  • clustering
    • data, downloading /
    • data, extracting /
    • data, inspecting /
  • clustering, text
    • about /
    • set-of-words /
    • Jaccard index /
    • Reuters files, tokenizing /
    • text, representing as vectors /
    • dictionary, creating /
  • cluster RMSE
    • calculating /
  • code
    • downloading /
    • downloading, URL /
  • coefficient of determination /
  • coefficient of multiple determination /
  • collinearity
    • about /
    • multicollinearity /
  • columns
    • adding /
  • combinations function
    • URL /
  • communities, with label propagation
    • detecting /
    • map vertices /
    • vertex attribute, sending /
    • aggregate value /
    • vertex function /
    • maximum iterations count, setting /
  • comparative visualizations
    • about /
    • box and whisker plots /
    • cumulative distribution functions /
    • probability mass function (PMF) /
    • scatter plots /
    • scatter transparency /
  • confidence interval
    • about /
  • confounding variables
    • about /
  • confusion matrix /
  • connected components
    • running /
    • largest connected component, size calculating /
  • connected components, with Pregel API
    • about /
    • map vertices /
    • message function /
    • attributes, updating /
    • convergence, iterating to /
  • construction
    • about /
  • content-based filtering /
  • content distribution network (CDN) /
  • covariance
    • about /
    • calculating, with Tesser /
  • cross-validation
    • about /
  • cumulative distribution function (CDF)
    • about /
  • Cumulative distribution functions (CDFs)
    • about /
D
  • daily means distribution
    • about /
  • data
    • inspecting /
    • loading /
    • about /
    • Guardian's excellent data blog, URL /
    • visualizing /
    • downloading /
    • downloading, URL /
    • parsing /
  • data scrubbing
    • about /
  • Davies-Bouldin index
    • used, for determining optimal k /
  • decision trees
    • about /
    • information /
    • entropy /
    • information gain /
    • information gain, using to identify best predictor /
    • building, recursively /
    • using, for classification /
    • classifier, evaluating /
    • building, in clj-ml /
  • degenerate matrices /
  • degrees of freedom
    • about /
  • Delta rule /
  • dependent variable
    • about /
  • depth-first search /
  • descriptive statistics
    • about /
    • mean /
    • mathematical notation, interpreting /
    • median /
  • dictionary
    • creating /
  • dimensionality reduction
    • about /
    • Iris dataset, plotting /
    • principle component analysis (PCA) /
    • principle component analysis(PCA) /
    • Singular Value Decomposition (SVD) /
  • dimensions
    • about /
  • Directed Acyclic Graph (DAG) /
  • Discounted Cumulative Gain (DCG) /
  • discrete time models
    • about /
    • random walks /
    • autoregressive (AR) models /
    • autocorrelation, determining in AR models /
    • Moving Average (MA) models /
    • partial autocorrelation function (PACF), calculating /
    • seasonality, removing with differencing /
  • distance measures, evaluating
    • about /
    • Pearson correlation similarity /
    • Spearmans rank similarity /
  • distributed cache
    • data, sharing with /
  • distributed unique IDs
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