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Carlos Martín-Vide - Algorithms for Computational Biology: 8th International Conference, AlCoB 2021, Missoula, MT, USA, June 7–11, 2021, Proceedings

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Carlos Martín-Vide Algorithms for Computational Biology: 8th International Conference, AlCoB 2021, Missoula, MT, USA, June 7–11, 2021, Proceedings
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Carlos Martín-Vide - Algorithms for Computational Biology: 8th International Conference, AlCoB 2021, Missoula, MT, USA, June 7–11, 2021, Proceedings
Algorithms for Computational Biology: 8th International Conference, AlCoB 2021, Missoula, MT, USA, June 7–11, 2021, Proceedings
Carlos Martín-Vide
Algorithms for Computational Biology: 8th International Conference, AlCoB 2021, Missoula, MT, USA, June 7–11, 2021, Proceedings

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Book cover of Algorithms for Computational Biology Volume 12715 Lecture - photo 1
Book cover of Algorithms for Computational Biology
Volume 12715
Lecture Notes in Computer Science Lecture Notes in Bioinformatics
Series Editors
Sorin Istrail
Brown University, Providence, RI, USA
Pavel Pevzner
University of California, San Diego, CA, USA
Michael Waterman
University of Southern California, Los Angeles, CA, USA
Editorial Board
Sren Brunak
Technical University of Denmark, Kongens Lyngby, Denmark
Mikhail S. Gelfand
IITP, Research and Training Center on Bioinformatics, Moscow, Russia
Thomas Lengauer
Max Planck Institute for Informatics, Saarbrcken, Germany
Satoru Miyano
University of Tokyo, Tokyo, Japan
Eugene Myers
Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
Marie-France Sagot
Universit Lyon 1, Villeurbanne, France
David Sankoff
University of Ottawa, Ottawa, Canada
Ron Shamir
Tel Aviv University, Ramat Aviv, Tel Aviv, Israel
Terry Speed
Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia
Martin Vingron
Max Planck Institute for Molecular Genetics, Berlin, Germany
W. Eric Wong
University of Texas at Dallas, Richardson, TX, USA

More information about this subseries at http://www.springer.com/series/5381

Editors
Carlos Martn-Vide , Miguel A. Vega-Rodrguez and Travis Wheeler
Algorithms for Computational Biology
8th International Conference, AlCoB 2021, Missoula, MT, USA, June 711, 2021, Proceedings
1st ed. 2021
Logo of the publisher Editors Carlos Martn-Vide Rovira i Virgili - photo 2
Logo of the publisher
Editors
Carlos Martn-Vide
Rovira i Virgili University, Tarragona, Spain
Miguel A. Vega-Rodrguez
University of Extremadura, Cceres, Spain
Travis Wheeler
University of Montana, Missoula, MT, USA
ISSN 0302-9743 e-ISSN 1611-3349
Lecture Notes in Computer Science Lecture Notes in Bioinformatics
ISBN 978-3-030-74431-1 e-ISBN 978-3-030-74432-8
https://doi.org/10.1007/978-3-030-74432-8
Springer Nature Switzerland AG 2021
This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed.
The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use.
The publisher, the authors and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, expressed or implied, with respect to the material contained herein or for any errors or omissions that may have been made. The publisher remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

This Springer imprint is published by the registered company Springer Nature Switzerland AG

The registered company address is: Gewerbestrasse 11, 6330 Cham, Switzerland

Preface

These proceedings contain the papers that were presented at the 8th International Conference on Algorithms for Computational Biology (AlCoB 2021), held in Missoula, Montana, USA, during June 711, 2021. Due to the COVID-19 pandemic, AlCoB 2020 and AlCoB 2021 were merged and held on these dates together. AlCoB 2020 proceedings were published as LNCS/LNBI 12099.

The scope of AlCoB includes topics of either theoretical or applied interest, namely

  • Sequence analysis

  • Sequence alignment

  • Sequence assembly

  • Genome rearrangement

  • Regulatory motif finding

  • Phylogeny reconstruction

  • Phylogeny comparison

  • Structure prediction

  • Compressive genomics

  • Proteomics: molecular pathways, interaction networks, mass spectrometry analysis

  • Transcriptomics: splicing variants, isoform inference and quantification, differential analysis

  • Next-generation sequencing: population genomics, metagenomics, metatranscriptomics, epigenomics

  • Genome CD architecture

  • Microbiome analysis

  • Cancer computational biology

  • Systems biology

AlCoB 2021 received 22 submissions. Most papers were reviewed by three Program Committee members. There were also a few external reviewers consulted. After a thorough and vivid discussion phase, the committee decided to accept 12 papers (which represents an acceptance rate of about 55%). The conference program included three invited talks and some poster presentations of work in progress.

The excellent facilities provided by the EasyChair conference management system allowed us to deal with the submissions successfully and handle the preparation of these proceedings in time.

We would like to thank all invited speakers and authors for their contributions, the Program Committee and the external reviewers for their cooperation, and Springer for its very professional publishing work.

Carlos Martn-Vide
Miguel A. Vega-Rodrguez
Travis Wheeler
March 2021
Organization

AlCoB 2021 was organized by the University of Montana, Missoula, USA, and the Institute for Research Development, Training and Advice (IRDTA), Brussels/London, Belgium/UK.

Program Committee
Ludmil Alexandrov

University of California, San Diego, USA

Can Alkan

Bilkent University, Turkey

Mani Arumugam

University of Copenhagen, Denmark

Bonnie Berger

Massachusetts Institute of Technology, USA

Sanchita Bhattacharya

University of California, San Francisco, USA

Chao Cheng

Dartmouth College, USA

Keith Crandall

George Washington University, USA

Colin Dewey

University of Wisconsin-Madison, USA

Ian Dunham

European Bioinformatics Institute, UK

Anton Enright

University of Cambridge, UK

Joe Felsenstein

University of Washington, USA

Pedro G. Ferreira

University of Porto, Portugal

Martin Frith

University of Tokyo, Japan

Debashis Ghosh

University of Colorado, USA

Michael Gribskov

Purdue University, USA

Michael Hawrylycz

Allen Institute for Brain Science, USA

Daniel Huson

University of Tbingen, Germany

Kazutaka Katoh

Osaka University, Japan

Miriam Konkel

Clemson University, USA

Maria-Jesus Martin

European Bioinformatics Institute, UK

Carlos Martn-Vide (Chair)

Rovira i Virgili University, Spain

David H. Mathews

University of Rochester, USA

Aaron McKenna

Dartmouth College, USA

Ryan E. Mills

University of Michigan, USA

Burkhard Morgenstern

University of Gttingen, Germany

Zemin Ning

Wellcome Sanger Institute, UK

Joel S. Parker
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