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Jorge Ortega (editor) - Conservation Genetics in Mammals: Integrative Research Using Novel Approaches

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Jorge Ortega (editor) Conservation Genetics in Mammals: Integrative Research Using Novel Approaches

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This book focuses on the use of molecular tools to study small populations of rare and endangered mammals, and presents case studies that apply an evolutionary framework to address innovative questions in the emerging field of mammalian conservation genomics using a highly diverse set of novel molecular tools. Novel and more precise molecular technologies now allow experts in the field of mammology to interpret data in a more contextual and empirical fashion and to better describe the evolutionary and ecological processes that are responsible for the patterns they observe.
The book also demonstrates how recent advances in genetic/genomic technologies have been applied to assess the impact of environmental/anthropogenic changes on the health of small populations of mammals. It examines a range of issues in the field of mammalian conservation genomics, such as the role that the genetic diversity of the immune system plays in disease protection and local adaptation; the use of noninvasive techniques and genomic banks as a resource for monitoring and restoring populations; the structuring of population by physical barriers; and genetic diversity. Further, by integrating research from a variety of areas including population genetics, molecular ecology, systematics, and evolutionary and conservation biology it enables readers to gain a deeper understanding of the conservation biology of mammals that are at increasing risk of extinction at local, regional and global scales. As such, it offers a unique resource for a broad readership interested in the conservation biology of mammals and conservation management strategies to better preserve biodiversity.

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Editors Jorge Ortega and Jesus E Maldonado Conservation Genetics in - photo 1
Editors
Jorge Ortega and Jesus E. Maldonado
Conservation Genetics in Mammals
Integrative Research Using Novel Approaches
Editors Jorge Ortega Escuela Nacional de Ciencias Biolgicas Instituto - photo 2
Editors
Jorge Ortega
Escuela Nacional de Ciencias Biolgicas, Instituto Politcnico Nacional, Mexico City, Mexico
Jesus E. Maldonado
Center for Conservation Genomics, Smithsonian Conservation Biology Institute, National Zoological Park, Washington, DC, USA
ISBN 978-3-030-33333-1 e-ISBN 978-3-030-33334-8
https://doi.org/10.1007/978-3-030-33334-8
Smithsonian Institution 2020
This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed.
The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use.
The publisher, the authors and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, expressed or implied, with respect to the material contained herein or for any errors or omissions that may have been made. The publisher remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

This Springer imprint is published by the registered company Springer Nature Switzerland AG

The registered company address is: Gewerbestrasse 11, 6330 Cham, Switzerland

Contents
Generalities of Conservation Genetics
Klaus-Peter Koepfli and Rebecca M. Gooley
Giovanni Forcina and Jennifer A. Leonard
Serena E. Dool
Integrative Genetic Tools to Assess Population Parameters
Susana Gonzlez , Mara Pa Aristimuo , Claudia Elizondo , Leticia Bidegaray-Batista , Pedro Henrique de Faria Peres and Jos Mauricio Barbanti Duarte
Jan E. Janecka , Charlotte Hacker , Jennifer Broderick , Sree Pulugulla , Philip Auron , McKenna Ringling , Brionna Nelson , Bariushaa Munkhtsog , Shafqat Hussain , Brian Davis and Rodney Jackson
Gabriela Castellanos-Morales and Luis E. Eguiarte
Maria Clara Arteaga , Jaime Gasca-Pineda , Rafael Bello-Bedoy , Luis E. Eguiarte and Rodrigo A. Medellin
Manuel Ruiz-Garca , Jessica Yanina Arias Vsquez , Armando Castellanos , Lydia Kolter and Joseph M. Shostell
Anthropogenic Effects on the Genetic Viability of Wildlife Populations
Leslie M. Montes-Carreto , Jos Antonio Guerrero and Jorge Ortega
Emily E. Puckett and Lori S. Eggert
Marissa Ahlering , Kris Budd , Stephanie Schuttler and Lori S. Eggert
Melissa E. Rodrguez , Jorge Ortega , Gustavo Gutirrez-Espeleta , J. Edgardo Arvalo and Bernal Rodrguez-Herrera
Tammy R. Wilbert , Jess E. Maldonado , Mirian T. N. Tsuchiya , Masoumeh Sikaroodi , Brian L. Cypher , Christine Van Horn Job , Katherine Ralls and Patrick M. Gillevet
Multitask Genetic Applicability to Preserve Species in the Future
Ella Vzquez-Domnguez , Tania Garrido-Garduo and Edith Calixto-Prez
J. M. Seddon and B. Schultz
Yocelyn T. Gutirrez-Guerrero , Gabriela Castellanos-Morales and Luis E. Eguiarte
Part I Generalities of Conservation Genetics
This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply 2020
J. Ortega, J. E. Maldonado (eds.) Conservation Genetics in Mammals https://doi.org/10.1007/978-3-030-33334-8_1
A Modern Synthesis of Mammal Conservation Genetics
Klaus-Peter Koepfli
(1)
Smithsonian Conservation Biology Institute, Center for Species Survival, National Zoological Park, Front Royal, VA 22630, USA
(2)
Smithsonian Conservation Biology Institute, Center for Species Survival, National Zoological Park, Washington, DC 20008, USA
(3)
Smithsonian-Mason on School of Conservation, Front Royal, VA 22630, USA
Klaus-Peter Koepfli
Email:
Introduction

It was only in 2018 that a revised and updated synthesis of mammalian taxonomy since 2004 revealed that there are at least 6495 recognized species in the class Mammalia, with species richness concentrated in the Neotropics and Afrotropics (Burgin et al. ).

At the same time, however, many mammal species are increasingly threatened by anthropogenic pressures such as environmental pollution, poaching and illegal trade, habitat degradation and loss, and most importantly, climate change, which will likely accelerate population and species extirpation. Of the 6495 recognized mammal species described in the synthesis above, approximately 96 have become recently extinct (Burgin et al. ). Many of these species have lost >50% of their range, and their decline and potential loss result in severe disruptions in ecosystem functions that impact many other species.

The increasing contraction and fragmentation of mammalian populations also pose a threat through the erosion or loss of genetic diversity. Heritable genetic diversity is required for evolutionary change and adaptation and its loss impedes the long-term survival of species. When formerly large populations are reduced to small sizes, genetic diversity is rapidly lost, the possibility of inbreeding increases, and deleterious variants can accumulate through fixation such that individual and population fitness are reduced. Therefore, understanding the amount of genetic diversity contained in wild populations and how it is distributed among geographic populations is a major concern for conserving the integrity and sustainability of mammal species. These considerations have resulted in the genesis of this volume, which brings together a large number of researchers from different countries to produce a modern synthesis of knowledge about mammal conservation genetics and an outline of new research opportunities afforded by the increasing use of next-generation sequencing methods and genomic data.

Overview of Chapters

The 16 chapters presented in this volume are structured into four thematic parts. Here, we provide a brief synopsis of each chapter. Part I, Generalities of Conservation Genetics, is comprised of three chapters. An introduction to the book and its content is provided in this chapter. Chapter ).

Almost all of the chapters in the book present novel results on the conservation genetics of particular species. In Chap. , however, Serena Dool provides an overview of studies that have informed the conservation of bats (Order Chiroptera), which comprise about 20% of all extant species of mammals. Case studies from the literature covering phylogeography, evolutionary significant units, delimitation of cryptic species, and population connectivity are used to demonstrate the conservation applications and implications of genetic data for various bat species around the world. Especially noteworthy are the insights obtained from genetic studies of sites where bats from different roosting colonies or different species swarm together, thereby facilitating intraspecific gene flow or even interspecific hybridization. The use of noninvasive genetic methods based on fecal or hair samples has proven to be exceptionally useful for revealing bat population sizes and identification of rare species. The chapter concludes with a perspective on the potential benefits offered by genomic and high-throughput technologies and a call for more integration of genetic results into management and policy decisions related to bat conservation.

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