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Matthias Templ [Matthias Templ] - Simulation for Data Science with R

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Matthias Templ [Matthias Templ] Simulation for Data Science with R

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Harness actionable insights from your data with computational statistics and simulations using R

About This Book

  • Learn five different simulation techniques (Monte Carlo, Discrete Event Simulation, System Dynamics, Agent-Based Modeling, and Resampling) in-depth using real-world case studies
  • A unique book that teaches you the essential and fundamental concepts in statistical modeling and simulation

Who This Book Is For

This book is for users who are familiar with computational methods. If you want to learn about the advanced features of R, including the computer-intense Monte-Carlo methods as well as computational tools for statistical simulation, then this book is for you. Good knowledge of R programming is assumed/required.

What You Will Learn

  • The book aims to explore advanced R features to simulate data to extract insights from your data.
  • Get to know the advanced features of R including high-performance computing and advanced data manipulation
  • See random number simulation used to simulate distributions, data sets, and populations
  • Simulate close-to-reality populations as the basis for agent-based micro-, model- and design-based simulations
  • Applications to design statistical solutions with R for solving scientific and real world problems
  • Comprehensive coverage of several R statistical packages like boot, simPop, VIM, data.table, dplyr, parallel, StatDA, simecol, simecolModels, deSolve and many more.

In Detail

Data Science with R aims to teach you how to begin performing data science tasks by taking advantage of Rs powerful ecosystem of packages. R being the most widely used programming language when used with data science can be a powerful combination to solve complexities involved with varied data sets in the real world.

The book will provide a computational and methodological framework for statistical simulation to the users. Through this book, you will get in grips with the software environment R. After getting to know the background of popular methods in the area of computational statistics, you will see some applications in R to better understand the methods as well as gaining experience of working with real-world data and real-world problems. This book helps uncover the large-scale patterns in complex systems where interdependencies and variation are critical. An effective simulation is driven by data generating processes that accurately reflect real physical populations. You will learn how to plan and structure a simulation project to aid in the decision-making process as well as the presentation of results.

By the end of this book, you reader will get in touch with the software environment R. After getting background on popular methods in the area, you will see applications in R to better understand the methods as well as to gain experience when working on real-world data and real-world problems.

Style and approach

This book takes a practical, hands-on approach to explain the statistical computing methods, gives advice on the usage of these methods, and provides computational tools to help you solve common problems in statistical simulation and computer-intense methods.

Downloading the example code for this book. You can download the example code files for all Packt books you have purchased from your account at http://www.PacktPub.com. If you purchased this book elsewhere, you can visit http://www.PacktPub.com/support and register to have the code file.

Matthias Templ [Matthias Templ]: author's other books


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Index
A
  • aes(). assignment /
  • aesthetic mapping /
  • agent-based modeling /
  • agent-based modeling (ABM) /
  • agent-based models
    • about /
  • alias method /
  • arithmetic random number generators /
B
  • Beta distribution /
  • BFGS method /
  • bias
    • estimating, bootstrap used /
  • Bias Corrected alpha (BCa) confidence interval method /
  • Big Boss 2 approach /
  • Big Boss approach /
  • bootstrap /
    • about /
    • motivating example, with odds ratios /
    • working /
    • to estimate standard error /
    • complex estimation, example /
    • bias, estimating /
    • confidence intervals /
    • in regression analysis /
    • using /
    • method /
    • by draws from residuals /
    • in time series /
    • in case of complex sampling designs /
C
  • central limit theorem
    • about /
  • CG method /
  • classes
    • about /
  • classical linear regression model /
  • complex models
    • used, for simulating data /
  • Comprehensive R Archive Network (CRAN)
    • about /
    • reference link /
  • confidence intervals /
    • by bootstrap /
  • congruential generators /
    • linear /
    • multiplicative /
  • contamination
    • adding /
  • cross-validation
    • about /
    • classical linear regression model /
    • basic concept /
    • classical cross validation /
    • leave-one-out cross validation /
    • k-fold cross validation /
D
  • data
    • simulating, complex methods used /
    • model-based simple example /
  • data.table package
    • used, for data manipulation /
    • variable construction /
    • indexing /
    • subsetting /
    • keys /
    • fast subsetting /
    • calculations, in groups /
  • data manipulation
    • in R /
    • apply, using /
    • dplyr package, using /
    • data.table package, using /
  • Data Scientist approach /
  • data types, R
    • about /
    • vectors /
    • factors /
    • list /
    • data.frame /
    • array /
  • design-based simulation
    • about /
    • complex survey data, example /
    • synthetic population, simulation /
    • interest, estimators /
    • sampling design, defining /
    • stratified sampling, using /
    • contamination, adding /
    • performing, separately on different domains /
  • design-based simulation (DBS) /
  • design-based simulation studies /
  • dplyr package
    • used, for data manipulation /
    • local data frame /
    • selection of lines /
    • order /
    • selection of columns /
    • uniqueness /
    • variables, creating /
    • grouping /
    • aggregates /
    • window functions /
  • dynamics
    • about /
  • dynamic systems
    • in ecological modelling /
E
  • EM algorithm
    • about /
    • prerequisites /
    • formal definition /
    • introductory example /
    • explaining, by k-means clustering example /
    • used, for imputation of missing values /
  • estimators
    • properties /
    • confidence intervals /
    • robust estimators /
F
  • finite populations
    • simulating, with cluster or hierarchical structures /
  • Fortran** /
G
  • generators /
  • generic functions
    • about /
  • Gibbs sampler
    • about /
    • two-phase Gibbs sampler /
    • multiphase Gibbs sampler /
    • linear regression, application /
  • gradient ascent/descent method /
  • graphics package
    • about /
    • high-level graphics functions /
    • low-level graphics functions /
    • interactive functionsTopicn /
    • (high-level) plot example /
    • graphics parameters, controlling /
H
  • high-dimensional data
    • simulating, example /
  • high-level plot functions /
  • high performance computing
    • about /
    • slow functions, detecting with profiling /
    • benchmarking /
    • parallel computing /
    • interfaces to C++ /
I
  • information visualization
    • about /
    • graphics system, in R /
    • graphics package /
    • package ggplot2 /
  • interactive graphics /
  • inversion method /
J
  • jackknife
    • about /
    • sample /
    • disadvantages /
    • delete-d jackknife /
    • after bootstrap /
K
  • k-fold cross validation /
  • k-means clustering
    • used, for EM algorithm demonstration /
  • k-Nearest Neighbor (k-NN) /
L
  • L-BFGS-B method /
  • leave-one-out cross validation /
  • lottery
    • winning /
  • low-level functions /
M
  • machine numbers
    • and rounding, issues /
    • 64-bit representation, example /
    • convergence /
    • convergence, example /
  • Markov chain Monte Carlo (MCMC) /
  • Markov chain Monte Carlo (MCMC) methods /
  • Marsaglia
    • URL /
  • Mathematician approach /
  • method dispatch /
  • methods
    • about /
  • Metropolis-Hastings
    • about /
  • Metropolis Hasting algorithm
    • about /
    • Markov chains /
  • Metropolis sampler /
  • micro-simulation /
  • Minimum Covariance Determinant (MCD) algorithm /
  • missing completely at random (MCAR) /
  • missing not at random (MNAR) /
  • missing values
    • imputating, with EM algorithm /
    • inserting /
  • mixtures
    • model-based example /
  • model-based approach
    • to simulate data /
  • model-based example
    • with mixtures /
  • model-based simple example /
  • model-based simulation (MBS) /
  • model-based simulation studies
    • about /
    • latent model example /
    • example /
  • Modgen
    • URL /
  • Monte Carlo simulations
    • about /
    • Bayesian statistics /
    • Markov chain Monte Carlo (MCMC) methods /
    • statistical uncertainty /
    • multi-dimensional integrals /
    • numerical optimization /
    /
  • Monte Carlo tests
    • about /
    • motivating example /
    • permutation test, as special kind of MC test /
    • for multiple groups /
    • Hypothesis testing, bootstrap used /
    • multivariate normality, test for /
    • test, size /
    • power comparisons /
N
  • Nelder-Mead method /
  • Newton-Raphson method /
  • non-uniform distributed random variables, simulation
    • about /
    • inversion method /
    • alias method /
    • counts in tables, estimation with log-linear models /
    • rejection sampling /
    • values, simulating from normal distribution /
    • random numbers, simulating from Beta distribution /
    • truncated distributions /
    • Metropolis Hasting algorithm /
    • Markov chains /
    • Metropolis sampler /
    • Gibbs sampler /
    • MCMC samples, diagnosis /
  • numerical optimization
    • about /
    • gradient ascent/descent method /
    • Newton-Raphson method /
    • general-purpose optimization methods /
    • Nelder-Mead method /
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