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Kiran R Karkera - Building probabilistic graphical models with Python : solve machine learning problems using probabalistic graphical models implemented in Python with real-world applications

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Kiran R Karkera Building probabilistic graphical models with Python : solve machine learning problems using probabalistic graphical models implemented in Python with real-world applications
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Building Probabilistic Graphical Models with Python

Building Probabilistic Graphical Models with Python

Copyright 2014 Packt Publishing

All rights reserved. No part of this book may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, without the prior written permission of the publisher, except in the case of brief quotations embedded in critical articles or reviews.

Every effort has been made in the preparation of this book to ensure the accuracy of the information presented. However, the information contained in this book is sold without warranty, either express or implied. Neither the author, nor Packt Publishing, and its dealers and distributors will be held liable for any damages caused or alleged to be caused directly or indirectly by this book.

Packt Publishing has endeavored to provide trademark information about all of the companies and products mentioned in this book by the appropriate use of capitals. However, Packt Publishing cannot guarantee the accuracy of this information.

First published: June 2014

Production reference: 1190614

Published by Packt Publishing Ltd.

Livery Place

35 Livery Street

Birmingham B3 2PB, UK.

ISBN 978-1-78328-900-4

www.packtpub.com

Cover image by Manju Mohanadas (<>)

Credits

Author

Kiran R Karkera

Reviewers

Mohit Goenka

Shangpu Jiang

Jing (Dave) Tian

Xiao Xiao

Commissioning Editor

Kartikey Pandey

Acquisition Editor

Nikhil Chinnari

Content Development Editor

Madhuja Chaudhari

Technical Editor

Krishnaveni Haridas

Copy Editors

Alisha Aranha

Roshni Banerjee

Mradula Hegde

Project Coordinator

Melita Lobo

Proofreaders

Maria Gould

Joanna McMahon

Indexers

Mariammal Chettiyar

Hemangini Bari

Graphics

Disha Haria

Yuvraj Mannari

Abhinash Sahu

Production Coordinator

Alwin Roy

Cover Work

Alwin Roy

About the Author

Kiran R Karkera is a telecom engineer with a keen interest in machine learning. He has been programming professionally in Python, Java, and Clojure for more than 10 years. In his free time, he can be found attempting machine learning competitions at Kaggle and playing the flute.

I would like to thank the maintainers of Libpgm and OpenGM libraries, Charles Cabot and Thorsten Beier, for their help with the code reviews.

About the Reviewers

Mohit Goenka graduated from the University of Southern California (USC) with a Master's degree in Computer Science. His thesis focused on game theory and human behavior concepts as applied in real-world security games. He also received an award for academic excellence from the Office of International Services at the University of Southern California. He has showcased his presence in various realms of computers including artificial intelligence, machine learning, path planning, multiagent systems, neural networks, computer vision, computer networks, and operating systems.

During his tenure as a student, Mohit won multiple competitions cracking codes and presented his work on Detection of Untouched UFOs to a wide range of audience. Not only is he a software developer by profession, but coding is also his hobby. He spends most of his free time learning about new technology and grooming his skills.

What adds a feather to Mohit's cap is his poetic skills. Some of his works are part of the University of Southern California libraries archived under the cover of the Lewis Carroll Collection. In addition to this, he has made significant contributions by volunteering to serve the community.

Shangpu Jiang is doing his PhD in Computer Science at the University of Oregon. He is interested in machine learning and data mining and has been working in this area for more than six years. He received his Bachelor's and Master's degrees from China.

Jing (Dave) Tian is now a graduate researcher and is doing his PhD in Computer Science at the University of Oregon. He is a member of the OSIRIS lab. His research direction involves system security, embedded system security, trusted computing, and static analysis for security and virtualization. He is interested in Linux kernel hacking and compilers. He also spent a year on AI and machine learning direction and taught the classes Intro to Problem Solving using Python and Operating Systems in the Computer Science department. Before that, he worked as a software developer in the Linux Control Platform (LCP) group at the Alcatel-Lucent (former Lucent Technologies) R&D department for around four years. He got his Bachelor's and Master's degrees from EE in China.

Thanks to the author of this book who has done a good job for both Python and PGM; thanks to the editors of this book, who have made this book perfect and given me the opportunity to review such a nice book.

Xiao Xiao is a PhD student studying Computer Science at the University of Oregon. Her research interests lie in machine learning, especially probabilistic graphical models. Her previous project was to compare two inference algorithms' performance on a graphical model (relational dependency network).

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Preface

In this book, we start with an exploratory tour of the basics of graphical models, their types, why they are used, and what kind of problems they solve. We then explore subproblems in the context of graphical models, such as their representation, building them, learning their structure and parameters, and using them to answer our inference queries.

This book attempts to give just enough information on the theory, and then use code samples to peep under the hood to understand how some of the algorithms are implemented. The code sample also provides a handy template to build graphical models and answer our probability queries. Of the many kinds of graphical models described in the literature, this book primarily focuses on discrete Bayesian networks, with occasional examples from Markov networks.

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