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Dr. Hari M. Koduvely - Learning Bayesian Models with R

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Dr. Hari M. Koduvely Learning Bayesian Models with R
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Become an expert in Bayesian Machine Learning methods using R and apply them to solve real-world big data problems

About This Book
  • Understand the principles of Bayesian Inference with less mathematical equations
  • Learn state-of-the art Machine Learning methods
  • Familiarize yourself with the recent advances in Deep Learning and Big Data frameworks with this step-by-step guide
Who This Book Is For

This book is for statisticians, analysts, and data scientists who want to build a Bayes-based system with R and implement it in their day-to-day models and projects. It is mainly intended for Data Scientists and Software Engineers who are involved in the development of Advanced Analytics applications. To understand this book, it would be useful if you have basic knowledge of probability theory and analytics and some familiarity with the programming language R.

What You Will Learn
  • Set up the R environment
  • Create a classification model to predict and explore discrete variables
  • Get acquainted with Probability Theory to analyze random events
  • Build Linear Regression models
  • Use Bayesian networks to infer the probability distribution of decision variables in a problem
  • Model a problem using Bayesian Linear Regression approach with the R package BLR
  • Use Bayesian Logistic Regression model to classify numerical data
  • Perform Bayesian Inference on massively large data sets using the MapReduce programs in R and Cloud computing
In Detail

Bayesian Inference provides a unified framework to deal with all sorts of uncertainties when learning patterns form data using machine learning models and use it for predicting future observations. However, learning and implementing Bayesian models is not easy for data science practitioners due to the level of mathematical treatment involved. Also, applying Bayesian methods to real-world problems requires high computational resources. With the recent advances in computation and several open sources packages available in R, Bayesian modeling has become more feasible to use for practical applications today. Therefore, it would be advantageous for all data scientists and engineers to understand Bayesian methods and apply them in their projects to achieve better results.

Learning Bayesian Models with R starts by giving you a comprehensive coverage of the Bayesian Machine Learning models and the R packages that implement them. It begins with an introduction to the fundamentals of probability theory and R programming for those who are new to the subject. Then the book covers some of the important machine learning methods, both supervised and unsupervised learning, implemented using Bayesian Inference and R.

Every chapter begins with a theoretical description of the method explained in a very simple manner. Then, relevant R packages are discussed and some illustrations using data sets from the UCI Machine Learning repository are given. Each chapter ends with some simple exercises for you to get hands-on experience of the concepts and R packages discussed in the chapter.

The last chapters are devoted to the latest development in the field, specifically Deep Learning, which uses a class of Neural Network models that are currently at the frontier of Artificial Intelligence. The book concludes with the application of Bayesian methods on Big Data using the Hadoop and Spark frameworks.

Style and approach

The book first gives you a theoretical description of the Bayesian models in simple language, followed by details of its implementation in the R package. Each chapter has illustrations for the use of Bayesian model and the corresponding R package, using data sets from the UCI Machine Learning repository. Each chapter also contains sufficient exercises for you to get more hands-on practice.

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Learning Bayesian Models with R

Table of Contents
Learning Bayesian Models with R

Learning Bayesian Models with R

Copyright 2015 Packt Publishing

All rights reserved. No part of this book may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, without the prior written permission of the publisher, except in the case of brief quotations embedded in critical articles or reviews.

Every effort has been made in the preparation of this book to ensure the accuracy of the information presented. However, the information contained in this book is sold without warranty, either express or implied. Neither the author, nor Packt Publishing, and its dealers and distributors will be held liable for any damages caused or alleged to be caused directly or indirectly by this book.

Packt Publishing has endeavored to provide trademark information about all of the companies and products mentioned in this book by the appropriate use of capitals. However, Packt Publishing cannot guarantee the accuracy of this information.

First published: October 2015

Production reference: 1231015

Published by Packt Publishing Ltd.

Livery Place

35 Livery Street

Birmingham B3 2PB, UK.

ISBN 978-1-78398-760-3

www.packtpub.com

Credits

Author

Dr. Hari M. Koduvely

Reviewers

Philip B. Graff

Nishanth Upadhyaya

Commissioning Editor

Kartikey Pandey

Acquisition Editor

Nikhil Karkal

Content Development Editor

Athira Laji

Technical Editor

Taabish Khan

Copy Editor

Trishya Hajare

Project Coordinator

Bijal Patel

Proofreader

Safis Editing

Indexer

Hemangini Bari

Graphics

Abhinash Sahu

Production Coordinator

Nitesh Thakur

Cover Work

Nitesh Thakur

About the Author

Dr. Hari M. Koduvely is an experienced data scientist working at the Samsung R&D Institute in Bangalore, India. He has a PhD in statistical physics from the Tata Institute of Fundamental Research, Mumbai, India, and post-doctoral experience from the Weizmann Institute, Israel, and Georgia Tech, USA. Prior to joining Samsung, the author has worked for Amazon and Infosys Technologies, developing machine learning-based applications for their products and platforms. He also has several publications on Bayesian inference and its applications in areas such as recommendation systems and predictive health monitoring. His current interest is in developing large-scale machine learning methods, particularly for natural language understanding.

I would like to express my gratitude to all those who have helped me throughout my career, without whom this book would not have been possible. This includes my teachers, mentors, friends, colleagues, and all the institutions in which I worked, especially my current employer, Samsung R&D Institute, Bangalore. A special mention to my spouse, Prathyusha, and son, Pranav, for their immense moral support during the writing of the book.

About the Reviewers

Philip B. Graff is a data scientist with the Johns Hopkins University Applied Physics Laboratory. He works with graph analytics for a large-scale automated pattern discovery.

Philip obtained his PhD in physics from the University of Cambridge on a Gates Cambridge Scholarship, and a BS in physics and mathematics from the University of Maryland, Baltimore County. His PhD thesis implemented Bayesian methods for gravitational wave detection and the training of neural networks for machine learning.

Philip's post-doctoral research at NASA Goddard Space Flight Center and the University of Maryland, College Park, applied Bayesian inference to the detection and measurement of gravitational waves by ground and space-based detectors, LIGO and LISA, respectively. He also implemented machine leaning methods for improved gamma-ray burst data analysis. He has published books in the fields of astrophysical data analysis and machine learning.

I would like to thank Ala for her support while I reviewed this book.

Nishanth Upadhyaya has close to 10 years of experience in the area of analytics, Monte Carlo methods, signal processing, machine learning, and building end-to-end data products. He is active on StackOverflow and GitHub. He has a couple of patents in the area of item response theory and stochastic optimization. He has also won third place in the first ever Aadhaar hackathon organized by Khosla labs.

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Preface

Bayesian inference provides a unified framework to deal with all sorts of uncertainties when learning patterns from data using machine learning models and using it for predicting future observations. However, learning and implementing Bayesian models is not easy for data science practitioners due to the level of mathematical treatment involved. Also, applying Bayesian methods to real-world problems requires high computational resources. With the recent advancements in cloud and high-performance computing and easy access to computational resources, Bayesian modeling has become more feasible to use for practical applications today. Therefore, it would be advantageous for all data scientists and data engineers to understand Bayesian methods and apply them in their projects to achieve better results.

What this book covers

This book gives comprehensive coverage of the Bayesian machine learning models and the R packages that implement them. It begins with an introduction to the fundamentals of probability theory and R programming for those who are new to the subject. Then, the book covers some of the most important machine learning methods, both supervised learning and unsupervised learning, implemented using Bayesian inference and R. Every chapter begins with a theoretical description of the method, explained in a very simple manner. Then, relevant R packages are discussed and some illustrations using datasets from the UCI machine learning repository are given. Each chapter ends with some simple exercises for you to get hands-on experience of the concepts and R packages discussed in the chapter. The state-of-the-art topics covered in the chapters are Bayesian regression using linear and generalized linear models, Bayesian classification using logistic regression, classification of text data using Nave Bayes models, and Bayesian mixture models and topic modeling using Latent Dirichlet allocation.

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