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Antonello Mai - Chemical Epigenetics

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Antonello Mai Chemical Epigenetics
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Contents
Landmarks
Volume 33 Topics in Medicinal Chemistry Series Editors P R Bernstein - photo 1
Volume 33
Topics in Medicinal Chemistry
Series Editors
P. R. Bernstein
Philadelphia, USA
A. L. Garner
Ann Arbor, USA
G. I. Georg
Minneapolis, USA
J. A. Lowe
Stonington, USA
N. A. Meanwell
Princeton, USA
A. K. Saxena
Lucknow, India
C. T. Supuran
Sesto Fiorentino, Italy
A. Zhang
Pudong, China

Aims and Scope

Topics in Medicinal Chemistry (TMC) covers all relevant aspects of medicinal chemistry research, e.g. pathobiochemistry of diseases, identification and validation of (emerging) drug targets, structural biology, drugability of targets, drug design approaches, chemogenomics, synthetic chemistry including combinatorial methods, bioorganic chemistry, natural compounds, high-throughput screening, pharmacological in vitro and in vivo investigations, drug-receptor interactions on the molecular level, structure-activity relationships, drug absorption, distribution, metabolism, elimination, toxicology and pharmacogenomics. Drug research requires interdisciplinary team-work at the interface between chemistry, biology and medicine. To fulfil this need, TMC is intended for researchers and experts working in academia and in the pharmaceutical industry, and also for graduates that look for a carefully selected collection of high quality review articles on their respective field of expertise.

Medicinal chemistry is both science and art. The science of medicinal chemistry offers mankind one of its best hopes for improving the quality of life. The art of medicinal chemistry continues to challenge its practitioners with the need for both intuition and experience to discover new drugs. Hence sharing the experience of drug research is uniquely beneficial to the field of medicinal chemistry.

All chapters from Topics in Medicinal Chemistry are published OnlineFirst with an individual DOI. In references, Topics in Medicinal Chemistry is abbreviated as Top Med Chem and cited as a journal.

More information about this series at http://www.springer.com/series/7355

Editor
Antonello Mai
Chemical Epigenetics
With contributions by L. Altucci , P. B. Arimondo , R. Belle , M. Berdasco , P. E. Brennan , F. Cao , M. Conte , F. J. Dekker , C. DellAversana , M. Esteller , J. Fernandez , A. Ganesan , C. Giorgio , Q. Han , D. Hanly , J. A. Johnson , A. Kawamura , M. Lahtela-Kakkonen , C. Luise , N. I. Martin , J. Melesina , C. Moreno-Yruela , C. A. Olsen , W. C. K. Pomerantz , M. Rahnasto-Rilla , D. Robaa , D. Rotili , F. Sarno , G. Sbardella , C. L. Seiler , W. Sippl , G. Stazi , T. Suzuki , N. Y. Tretyakova , D. Trisciuoglio , J. Tyni , S. Valente , M. J. van Haren , M. Wright , P. D. Ycas , C. Zwergel and M. R. H. Zwinderman
Editor Antonello Mai Sapienza University of Rome Rome Italy ISSN - photo 2
Editor
Antonello Mai
Sapienza University of Rome, Rome, Italy
ISSN 1862-2461 e-ISSN 1862-247X
Topics in Medicinal Chemistry
ISBN 978-3-030-42981-2 e-ISBN 978-3-030-42982-9
https://doi.org/10.1007/978-3-030-42982-9
Springer Nature Switzerland AG 2020
This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed.
The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use.
The publisher, the authors, and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, expressed or implied, with respect to the material contained herein or for any errors or omissions that may have been made. The publisher remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

This Springer imprint is published by the registered company Springer Nature Switzerland AG.

The registered company address is: Gewerbestrasse 11, 6330 Cham, Switzerland

Preface

Epigenetics doesnt change the genetic code, it changes how thats read. Perfectly normal genes can result in cancer or death. Vice-versa, in the right environment, mutant genes wont be expressed. Genes are equivalent to blueprints; epigenetics is the contractor. They change the assembly, the Structure.Bruce Lipton

Nowadays, science is proving that our body possesses incredible self-healing and self-repairing ability. These mechanisms are markedly influenced by our lifestyle, environmental factors and also our beliefs, thoughts, emotions and intentions. A change in the aforementioned factors can affect or even alter completely the tendency for expression.

During this process, our enormous code base, the DNA, will be read and the manifestation which will be expressed is heavily influenced by epigenetic marks. These marks are either written, read or modified. So we are based not only on plain code, but we are the modifiers of the code through readers, writers and erasers. So we have a profound vibrational effect on our continually evolving genetic code. We are the programmers of the code. DNA activation is our software upgrade.

The specific scientific term epigenetics for these code reading, writing and erasing has been first defined in 1942 by C.H. Waddington. This term has been used in various contexts. Etymologically speaking, epigenetics deals with a precise branch of genetics as the Greek prefix epi means after, post or additionally. Today, in the molecular realm, all three meanings of epi are somewhat proven in the rapidly growing body of literature especially in the last decade dealing with fundamental processes in a living cell which are outside of the classical genetic processes and sources of genetic information like the DNA base pair sequence.

Today researches try to link an observed phenomenon or a disease down to the molecular level. Besides the longer known epigenetic targets such as histone deacetylases or DNA methyltransferases, a whole bunch of new enzymes and enzyme complexes have been discovered in the last 15 years. This book mainly discusses the recent advances in the drug development of epigenetic modulators from a medicinal chemists viewpoint. Modern techniques in biology, biochemistry and chemical biology allow researchers faster than ever to describe and discover new epigenetic players as well as novel functions of old and known ones. Medicinal chemistry plays a fundamental role in the discovery process as it provides not only tools to better understand the function of an epigenetic player but also novel therapy options where aberrant epigenetic mechanisms are involved.

The book comprises 16 chapters. Each chapter includes a short introduction for a single epigenetic target or a target family ranging from structural biology aspects to cell biology and biochemistry. Most of the space is devoted to target modulation, either inhibition or activation. The authors give an insight into the discovery and development of mainly small organic molecules and also peptides influencing epigenetic pathways. Modern aspects of drug design such as new methodologies, ranging from computational approaches, crystallography to structural biology are presented with hands-on examples.

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