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Jared P. Lander - R for Everyone: Advanced Analytics and Graphics

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Using the open source R language, you can build powerful statistical models to answer many of your most challenging questions. R has traditionally been difficult for non-statisticians to learn, and most R books assume far too much knowledge to be of help. R for Everyone is the solution.
Drawing on his unsurpassed experience teaching new users, professional data scientist Jared P. Lander has written the perfect tutorial for anyone new to statistical programming and modeling. Organized to make learning easy and intuitive, this guide focuses on the 20 percent of R functionality youll need to accomplish 80 percent of modern data tasks.
Landers self-contained chapters start with the absolute basics, offering extensive hands-on practice and sample code. Youll download and install R navigate and use the R environment master basic program control, data import, and manipulation and walk through several essential tests. Then, building on this foundation, youll construct several complete models, both linear and nonlinear, and use some data mining techniques.
By the time youre done, you wont just know how to write R programs, youll be ready to tackle the statistical problems you care about most.
COVERAGE INCLUDES
Exploring R, RStudio, and R packages
Using R for math: variable types, vectors, calling functions, and more
Exploiting data structures, including data.frames, matrices, and lists
Creating attractive, intuitive statistical graphics
Writing user-defined functions
Controlling program flow with if, ifelse, and complex checks
Improving program efficiency with group manipulations
Combining and reshaping multiple datasets
Manipulating strings using Rs facilities and regular expressions
Creating normal, binomial, and Poisson probability distributions
Programming basic statistics: mean, standard deviation, and t-tests
Building linear, generalized linear, and nonlinear models
Assessing the quality of models and variable selection
Preventing overfitting, using the Elastic Net and Bayesian methods
Analyzing univariate and multivariate time series data
Grouping data via K-means and hierarchical clustering
Preparing reports, slideshows, and web pages with knitr
Building reusable R packages with devtools and Rcpp
Getting involved with the R global community

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R for Everyone

Advanced Analytics and Graphics

Jared P. Lander

R for Everyone Advanced Analytics and Graphics - image 1

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Library of Congress Cataloging-in-Publication Data

Lander, Jared P.
R for everyone / Jared P. Lander.
pages cm
Includes bibliographical references.
ISBN-13: 978-0-321-88803-7 (alk. paper)
ISBN-10: 0-321-88803-0 (alk. paper)
1. R (Computer program language) 2. Scripting languages (Computer science) 3. StatisticsData
processing. 4. StatisticsGraphic methodsData processing. 5. Computer simulation. I. Title.
QA76.73.R3L36 2014
005.13dc23
2013027407

Copyright 2014 Pearson Education, Inc.

All rights reserved. Printed in the United States of America. This publication is protected by copyright, and permission must be obtained from the publisher prior to any prohibited reproduction, storage in a retrieval system, or transmission in any form or by any means, electronic, mechanical, photocopying, recording, or likewise. To obtain permission to use material from this work, please submit a written request to Pearson Education, Inc., Permissions Department, One Lake Street, Upper Saddle River, New Jersey 07458, or you may fax your request to (201) 236-3290.

ISBN-13: 978-0-321-88803-7
ISBN-10: 0-321-88803-0
Text printed in the United States on recycled paper at RR Donnelley in Crawfordsville, Indiana.
First printing, December 2013

To my mother and father Contents Foreword Rhas had tremendous growth in - photo 2

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To my mother and father
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Contents
Foreword

Rhas had tremendous growth in popularity over the last three years. Based on that, youd think that it was a new, up-and-coming language. But surprisingly, R has been around since 1993. Why the sudden uptick in popularity? The somewhat obvious answer seems to be the emergence of data science as a career and a field of study. But the underpinnings of data science have been around for many decades. Statistics, linear algebra, operations research, artificial intelligence, and machine learning all contribute parts to the tools that a modern data scientist uses. R, more than most languages, has been built to make most of these tools only a single function call away.

Thats why Im very excited to have this book as one of the first in the Addison-Wesley Data and Analytics Series. R is indispensable for many data science tasks. Many algorithms useful for prediction and analysis can be accessed through only a few lines of code, which makes it a great fit for solving modern data challenges. Data science as a field isnt just about math and statistics, and it isnt just about programming and infrastructure. This book provides a well-balanced introduction to the power and expressiveness of R and is aimed at a general audience.

I cant think of a better author to provide an introduction to R than Jared Lander. Jared and I first met through the New York City machine learning community in late 2009. Back then, the New York City data community was small enough to fit in a single conference room, and many of the other data meetups had yet to be formed. Over the last four years, Jared has been at the forefront of the emerging data science profession.

Through running the Open Statistical Programming Meetup, speaking at events, and teaching a course at Columbia on R, Jared has helped grow the community by educating programmers, data scientists, journalists, and statisticians alike. But Jareds expertise isnt limited to teaching. As an everyday practitioner, he puts these tools to use while consulting for clients big and small.

This book provides an introduction both to programming in R and to the various statistical methods and tools an everyday R programmer uses. Examples use publicly available datasets that Jared has helpfully cleaned and made accessible through his Web site. By using real data and setting up interesting problems, this book stays engaging to the end.

Paul Dix, Series Editor

Preface

With the increasing prevalence of data in our daily lives, new and better tools are needed to analyze the deluge. Traditionally there have been two ends of the spectrum: lightweight, individual analysis using tools like Excel or SPSS and heavy duty, high-performance analysis built with C++ and the like. With the increasing strength of personal computers grew a middle ground that was both interactive and robust. Analysis done by an individual on his or her own computer in an exploratory fashion could quickly be transformed into something destined for a server, underpinning advanced business processes. This area is the domain of R, Python, and other scripted languages.

R, invented by Robert Gentleman and Ross Ihaka of the University of Auckland in 1993, grew out of S, which was invented by John Chambers at Bell Labs. It is a high-level language that was originally intended to be run interactively where the user runs a command, gets a result, and then runs another command. It has since evolved into a language that can also be embedded in systems and tackle complex problems.

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