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Paul A. M. Michels (editor) - Trypanosomatids: Methods and Protocols (Methods in Molecular Biology (2116), Band 2116)

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Paul A. M. Michels (editor) Trypanosomatids: Methods and Protocols (Methods in Molecular Biology (2116), Band 2116)

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This volume explores the latest methods used by researchers to study different trypanosomatid parasites. These methods cover numerous disciplines, from organismal biology to molecular mechanism. The chapters in this book cover topics such as high-throughput sequencing; next-generation analysis of trypanosomatid genome stability and instability; DNA repair in cell extracts; ribosome profiling; and the use of CRISPR/Cas9 technology for gene editing. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Cutting-edge and practical, Trypanosomatids: Methods and Protocols is a valuable resource for any researcher working with trypanosomatids and trypanosomatid-borne diseases.
Chapters 14, 15, 16, 23, 24, 30, and 48 are open access under a CC BY 4.0 license.

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Volume 2116 Methods in Molecular Biology Series Editor John M Walker School - photo 1
Volume 2116
Methods in Molecular Biology
Series Editor
John M. Walker
School of Life and Medical Sciences, University of Hertfordshire, Hatfield, Hertfordshire, UK

For further volumes: http://www.springer.com/series/7651

For over 35 years, biological scientists have come to rely on the research protocols and methodologies in the critically acclaimedMethods in Molecular Biologyseries. The series was the first to introduce the step-by-step protocols approach that has become the standard in all biomedical protocol publishing. Each protocol is provided in readily-reproducible step-by-step fashion, opening with an introductory overview, a list of the materials and reagents needed to complete the experiment, and followed by a detailed procedure that is supported with a helpful notes section offering tips and tricks of the trade as well as troubleshooting advice. These hallmark features were introduced by series editor Dr. John Walker and constitute the key ingredient in each and every volume of theMethods in Molecular Biologyseries. Tested and trusted, comprehensive and reliable, all protocols from the series are indexed in PubMed.

Editors
Paul A. M. Michels , Michael L. Ginger and Dan Zilberstein
Trypanosomatids
Methods and Protocols
Editors Paul A M Michels School of Biological Sciences University of - photo 2
Editors
Paul A. M. Michels
School of Biological Sciences, University of Edinburgh, Edinburgh, UK
Michael L. Ginger
School of Applied Sciences, University of Huddersfield, Huddersfield, UK
Dan Zilberstein
Faculty of Biology, TechnionIsrael Institute of Technology, Haifa, Israel
ISSN 1064-3745 e-ISSN 1940-6029
Methods in Molecular Biology
ISBN 978-1-0716-0293-5 e-ISBN 978-1-0716-0294-2
https://doi.org/10.1007/978-1-0716-0294-2
The chapters 14, 15, 16, 23, 24, 30 and 48 are licensed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/). For further details see license information in the chapters.
Springer Science+Business Media, LLC, part of Springer Nature 2020
This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed.
The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use.
The publisher, the authors, and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, expressed or implied, with respect to the material contained herein or for any errors or omissions that may have been made. The publisher remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Cover illustration: Scanning electron micrograph of Angomonas deanei in early cytokinesis, cleavage furrow indicates two daughter cells ready for division with two externalised flagella. Courtesy of Drs. Carolina Catta-Preta and Cristina Motta (Chapter 26).

This Humana imprint is published by the registered company Springer Science+Business Media, LLC, part of Springer Nature.

The registered company address is: 1 New York Plaza, New York, NY 10004, U.S.A.

Preface

Around the turn of the twentieth century, parasitic protists were identified as causal agents of three groups of serious human diseases in tropical and subtropical countries in different parts of the world: sleeping sicknessor human African trypanosomiasis (HAT)in The Gambia [1], and subsequently in what was then North-East Rhodesia (now Zimbabwe) [2] and elsewhere; Chagas diseaseor American trypanosomiasisfirst in Brazil and then in large parts of Latin-America [3]; and visceral leishmaniasis, in India and then Tunisia [4]. These parasites wereTrypanosoma brucei gambiense,Trypanosoma brucei rhodesiense,Trypanosoma cruzi,Leishmania donovani, andLeishmania infantum. Recognition of otherLeishmaniaspecies responsible for the considerably different manifestations of leishmaniasis seen in many countries of different continents occurred steadily throughout the twentieth century, and novel pathogenicLeishmaniaspecies have continued to be discovered during the first two decades of the twenty-first century [4]. Coincident with the discoveries that apparently related trypanosomatid parasites were responsible for diverse (and serious) tropical diseases, a striking commonality in the mode of disease transmission was also recognized: these parasites were transmitted between people by specific blood-feeding insects.

Large populations wereand still areat risk of sleeping sickness, Chagas disease, or leishmaniasis. However, biological understanding of the parasites that cause these diseases and advances in dealing with the resultant health problems occurred at a slow pace for much of the last century. Some treatments for the diseases were developed (e.g., the antimonials introduced in the 1920s to treat leishmaniasis; suramin and melarsoprol, introduced in 1922 and 1949, respectively, to treat sleeping sickness). However, these and other medicines used to treat trypanosomatid diseases were not adequate: the medicines were little efficacious and often highly toxic. Indeed, there remains no medicine that can be used to treat effectively chronic forms of Chagas disease. Moreover, of the twentieth century pharmaceutical companies that arose and invested in research to develop drugs and vaccines for various human and veterinary infectious diseases, the trypanosomatid-borne diseases remained largely unexplored because they typically affected people living in impoverished regions. Thus, there was little economic incentive for the pharma industry to invest in such research. However, from the 1960s onwards, trypanosomatids started to attract the interest of academic laboratories, both in affluent countries, such as the USA, Japan, or within Europe, and the Global South where trypanosomatid diseases are typically endemic. This new interest was in part due to curiosity for peculiar aspects of the parasites, such as their large mitochondrial DNA content or the antigenic variation ofT. brucei, and in part it related to the wider health burden these parasites posed. Addressing the latter aspect was to a large extent made possible by the Special Programme for Research and Training in Tropical Diseases (TDR), created in 1974 by the World Health Organization (WHO), with cosponsoring by the United Nations Development Programme (UNDP), the World Bank, and UNICEF. TDR set out to conduct research on a defined group of neglected, tropical diseases, including those caused by the three trypanosomatid parasites (TriTryp) aimed at developing new tools to help control them and to train scientists and strengthen institutions from the endemic countries, so that they could play a major role in this endeavor [5, 6]. From the 1980s, research of the parasites and possibilities to combat the diseases was further boosted by support for collaboration between teams from countries in the north and those from countries in the south afflicted by the diseases, enabling multidisciplinary approaches, by organizations like the European Economic Community (later the European Union), the National Institutes of Health (NIH) in the USA, and later also various philanthropic organizations. Crucially, research supported by these and other initiatives has seen the introduction of a few new medicines into the clinic (e.g., eflornithine to treat sleeping sickness; amphotericin B and miltefosine to treat leishmaniasis), often through the repurposing of medicines developed to treat other diseases (for reviews,

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