Hauke Smidt - Good Microbes in Medicine, Food Production, Biotechnology, Bioremediation, and Agriculture

Note: Page references in italics refer to figures and tables.

• A
• AA see
• AAB see
• abiotic stress, induced resistance to,
• ACAs see
• ACE2 see
• acetic acid bacteria (AAB), 30
• acetogenesis, 31617
• acetoin,
• acidic fermented foods, 132, 134
• Acidithiobacillus species,
• acidity,
• acidogenesis, 316
• acute lymphoblastic leukemia (ALL),
• adaptive immune responses,
• adenosine triphosphate (ATP) synthase,
• adipic acid (AA),
• AD process see
• aerial ecosystems,
• aerobic bioremediation,
• aerobic glycerol metabolism, 1
• Africa, fermented foods and beverages of,
• aglycone,
• agricultural/agriculture

• beneficial microbes for
  • antibiotics and pesticides,
  • application of, 4367
  • discovering and capturing novel, 6
  • embedded in plant microbiome, 4302
  • food supply chain,
  • hologenome theory of evolution,
  • of microbiome management concepts,
  • use of,
  • vision and future challenges, 8

• companies and organizations
  • acquisitions, mergers, and alliances,
  • in biocontrol science,
  • fundamental research to industry, 6
  • great discovery, 5
  • indirect plant growth promotion,
  • microbes, 4
  • producing microbes, 7
  • for registration and consultation, 5378

• production,
• products,
• trichoderma products in

• in Agricultural Development, 5
• agricultural sustainability,
• diverse farming systems of crops,
• farming system,
• fungusplant interaction,
• global climate change,
• living microorganisms,
• spore formulation,

• Agriculture of Low Carbon Consumption,
• agrobacterium tumefaciens, natural genetic engineer,
• air pumping systems,
• alcoholic beverages,
  • global aroma of,
  • production of,

• alcoholic fermentation,
  • chemical composition during,
  • microbial interactions during,
  • microbial populations during,
  • succession of microorganisms during,

• aldehydes,
• alicyclic hydrocarbons,
• aliphatic compounds,
• alkanes,
• ALL see
• allelopathic chemicals,
• allergic diseases,
• allergic reactions, avoidance and management of,
• American coolship ales (ACAs),
• 1-aminocyclopropane-1-carboxylase (ACC),
• AM Symbiosis, 5
• anaerobic digestion (AD) process,
• anaerobic glycerol metabolism
  • for industrial chemical production, 2
  • microbial glycerol reduction for chemical production,

• anaerobiosis, lactic acid bacteria in,
• anaphylaxis, 8
• angiotensin-converting enzyme receptor 2 (ACE2), 5
• anthracene,
• Anthropocene,
• antibiotic resistance genes (ARGs),
• antibiotics,
• antigen-presenting cells (APCs),
• antimicrobial resistance genes (ARGs),
• antimicrobials, 5
• antiperspirants,
• APCs see
• apocrine glands,
• apoeccrine glands,
• aquatic environments, natural self-purification capacity of,
• arbuscules,
• ARC see
• ARGs see ; antimicrobial resistance genes (ARGs)
• armpit bacterial transplant,
• aroma profile of wine,
• aromatherapy
  • ability of microorganisms,
  • microbial volatile
    • application of compounds, 12
    • plant growth, improving,
    • plant pathogens, 10
    • systemic resistance in plants, 9
  • plant lifecycles,

• aromatic compounds,
• aromatic hydrocarbons,
• aromatic precursors, 11516
• aromatics bioremediation
  • aerobic biodegradation pathway of biphenyl,
  • biphenyl-degrading consortium,
  • polycyclic aromatic hydrocarbons (PAHs),

• aromatic yeasts, 14
  • in alcoholic beverages, 14
  • aromatic precursors, 11516
  • Debaryomyces and Kluyveromyces,
  • in fermentations, 1201,
    • aroma compounds, , 120
    • traditional, 4
  • in foods from animal sources, 17
  • Saccharomyces and non-Saccharomyces, 15
  • vegetables, 2

• arsenate (AsV),
• arsenate reductase (ARC),
• Artemisinin,
• artisanal cheeses,
• ascomycetous yeasts, 215
• Ascomycota,
• Aspergillus
  • A. niger,
  • A. oryzae,
  • A. terreus,

• assembly-based profiling,
• atopic dermatitis, incidence and severity of,
• ATP synthase see
• Australia, ethnic fermented foods and beverages of, 132,
• autochthonous microbiome,
• autotrophic oceanic microbes,
• axillary microbiome, 5

• B
• Bacillus amyloliquefaciens,
• Bacillus thuringiensis (Bt), 481
  • bacterial insecticides to humans, 481
    • EFSA concerns,
    • European Food Safety Association (EFSA), 481
    • spores and cry proteins,
  • biology and mode of action,
    • cry protein,
    • cyt protein,
    • genes encoding,
    • insecticides and crops,
    • life cycle,
  • commercial Btk formulations,
  • food sources and key pathogens,
  • strains,

• bacteria, carbon source for,
• bacterial consortia, 5
  • advantages, 5
  • consortium,
  • interaction mechanisms between members,
  • limitations, 5
  • metagenomics,
    • assembly-based profiling,
    • read-based profiling, 9
    • targeted,

• bacterial diversity,
• bacterial fat,3034
• bacterial insecticides
  • Bacillus thuringiensis and Bacillus cereus,
  • development of,
  • earlier study on safety, 81
  • enterotoxins of, 481
  • and mode of action, 9
  • safety
    • of bacterial insecticides to humans, 4812
    • and non-target effects of crops, 4

• bacterial microbiota,
  • numbers and predominant genera of,

• bacterial quorum sensing,
• bacteriocins,
  • classification, 3
  • in fish and fish products, 100
  • in fruit, vegetables and by-products,
  • in meat and meat products, 7
  • production of,

• bacteriotherapy,
• Bacterium,
• bacteroids,
• bad bugs,
• baked goods and flours,
• bakers yeast,
• BCA see
• beer production, selected starters for,
• beer-spoiling bacteria, 31
• Belgian beers,
• beneficial microbes
  • for agriculture
    • antibiotics and pesticides,
    • application of, 4367
    • discovering and capturing novel, 6
    • embedded in the plant microbiome, 2
    • food supply chain,
    • hologenome theory of evolution,
    • of microbiome management concepts,
    • use of,
    • vision and future challenges, 8
  • application of, 4367

• BES see
• Bifidobacterium
  • benefits of, 16
  • bifidobacterial metabolism,
  • and diversity,
  • global distribution of,
  • HMO consumption,
  • human milk oligosaccharides,
  • populations, 18

• bifid shunt,
• Bill and Melinda Gates Foundation,