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Guy-Franck Richard - Trinucleotide Repeats: Methods and Protocols

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Guy-Franck Richard Trinucleotide Repeats: Methods and Protocols

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Volume 2056 Methods in Molecular Biology Series Editor John M Walker School - photo 1
Volume 2056
Methods in Molecular Biology
Series Editor
John M. Walker
School of Life and Medical Sciences, University of Hertfordshire, Hatfield, Hertfordshire, UK

For further volumes: http://www.springer.com/series/7651

For over 35 years, biological scientists have come to rely on the research protocols and methodologies in the critically acclaimed Methods in Molecular Biology series. The series was the first to introduce the step-by-step protocols approach that has become the standard in all biomedical protocol publishing. Each protocol is provided in readily-reproducible step-by-step fashion, opening with an introductory overview, a list of the materials and reagents needed to complete the experiment, and followed by a detailed procedure that is supported with a helpful notes section offering tips and tricks of the trade as well as troubleshooting advice. These hallmark features were introduced by series editor Dr. John Walker and constitute the key ingredient in each and every volume of the Methods in Molecular Biology series. Tested and trusted, comprehensive and reliable, all protocols from the series are indexed in PubMed.

Editor
Guy-Franck Richard
Trinucleotide Repeats
Methods and Protocols
Editor Guy-Franck Richard Department Genomes Genetics Institut Pasteur - photo 2
Editor
Guy-Franck Richard
Department Genomes & Genetics, Institut Pasteur, Paris, France
ISSN 1064-3745 e-ISSN 1940-6029
Methods in Molecular Biology
ISBN 978-1-4939-9783-1 e-ISBN 978-1-4939-9784-8
https://doi.org/10.1007/978-1-4939-9784-8
Springer Science+Business Media, LLC, part of Springer Nature 2020
This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed.
The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use.
The publisher, the authors, and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, express or implied, with respect to the material contained herein or for any errors or omissions that may have been made. The publisher remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Cover illustration: Trinucleotide repeat secondary structures: an artist view. Original painting by Emily Richard.

This Humana imprint is published by the registered company Springer Science+Business Media, LLC, part of Springer Nature.

The registered company address is: 233 Spring Street, New York, NY 10013, U.S.A.

Preface

Since the discovery of the first human disorder linked to trinucleotide repeat expansions , almost three decades ago, researchers in the field have been fascinated by the unusual properties of these peculiar microsatellites . In order to understand the complex dynamics of trinucleotide repeats, experimental designs were conceived in model systems such as bacteria, yeast , flies, human cells , and transgenic mouse. One aspect of the problems complexity is reflected by the technical challenges raised by secondary structure -forming repeats and their propensity to contract and expand over time. These will be dealt with in Chapters . Finally, tentative gene therapy approaches using the CRISPR-Cas family of endonucleases will be presented in the last two chapters.

We hope that this series of methods and protocols will be valuable to confirmed researchers in the field, as well as to newcomers to the fascinating and ever-expanding world of trinucleotide repeats.

Guy-Franck Richard
Paris, France
Contents
Guy-Franck Richard
Stphanie Tom and Genevive Gourdon
Gregory M. Williams , Athena K. Petrides , Lata Balakrishnan and Jennifer A. Surtees
David Viterbo and Guy-Franck Richard
Erica J. Polleys and Catherine H. Freudenreich
Wenying Guo and Kirill S. Lobachev
Lucie Poggi , Bruno Dumas and Guy-Franck Richard
Rujuta Yashodhan Gadgil , S. Dean Rider Jr. , Todd Lewis , Joanna Barthelemy and Michael Leffak
Artem V. Kononenko , Thomas Ebersole and Sergei M. Mirkin
Gregory M. Williams and Robert S. Lahue
Xiaonan Zhao , Huiyan Lu , Pradeep K. Dagur and Karen Usdin
Remco T. P. van Cruchten and Derick G. Wansink
Arnaud F. Klein , Ludovic Arandel , Joelle Marie and Denis Furling
Sandra O. Braz , Diana M. Dinca , Genevive Gourdon and Mrio Gomes-Pereira
Olivier Griso and Hlne Puccio
Cinzia Cinesi , Bin Yang and Vincent Dion
Magdalena Dabrowska and Marta Olejniczak
Contributors
Ludovic Arandel
Centre de Recherche en Myologie, Sorbonne Univerist, Paris, France
Centre de Recherche en Myologie, Inserm, Paris, France
Association Institut de Myologie, Paris, France
Lata Balakrishnan
Department of Biology, Indiana University Purdue University Indianapolis, Indianapolis, IN, USA
Joanna Barthelemy
Department of Biochemistry and Molecular Biology, Boonshoft School of Medicine, Wright State University, Dayton, OH, USA
Sandra O. Braz
Laboratory CTGDM, Inserm UMR1163, Paris, France
Institut Imagine, Universit Paris DescartesSorbonne Paris Cit, Paris, France
Cinzia Cinesi
Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland
Magdalena Dabrowska
Department of Genome Engineering, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland
Pradeep K. Dagur
Flow Cytometry Core, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD, USA
Diana M. Dinca
Laboratory CTGDM, Inserm UMR1163, Paris, France
Institut Imagine, Universit Paris DescartesSorbonne Paris Cit, Paris, France
Vincent Dion
Dementia Research Institute, Cardiff University, Cardiff, UK
Bruno Dumas
Biologics Research, Sanofi R&D, Vitry sur Seine, France
Thomas Ebersole
Department of Biology, Tufts University, Medford, MA, USA
Catherine H. Freudenreich
Department of Biology, Tufts University, Medford, MA, USA
Denis Furling
Centre de Recherche en Myologie, Sorbonne Univerist, Paris, France
Centre de Recherche en Myologie, Inserm, Paris, France
Association Institut de Myologie, Paris, France
Rujuta Yashodhan Gadgil
Department of Biochemistry and Molecular Biology, Boonshoft School of Medicine, Wright State University, Dayton, OH, USA
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