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Biggiogera Marco - Histochemistry of single molecules: methods and protocols

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Biggiogera Marco Histochemistry of single molecules: methods and protocols

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This detailed volume explores numerous histochemical techniques through a series of lab-tested protocols for the detection of specific molecules or metabolic processes, both at light and electron microscopy. More in detail, the book is divided into six sections covering a variety of chemical targets. It begins with a section on vital histochemistry and continues with chapters on histochemistry as it relates to lectins, proteins, lipids, DNA and RNA, as well as plants. The volume also contains four overview chapters on vital histochemistry, lectin histochemistry, and DNA fluorochromes. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Histochemistry of Single Molecules: Methods and Protocols aims to effectively help scientists in very different research fields to elucidate biological issues though a unique approach to molecular biology in situ. -- OCLC.

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Part I
Vital Histochemistry
Springer Science+Business Media LLC 2017
Carlo Pellicciari and Marco Biggiogera (eds.) Histochemistry of Single Molecules Methods in Molecular Biology 1560 10.1007/978-1-4939-6788-9_1
1. Single Cell Cytochemistry Illustrated by the Demonstration of Glucose-6-Phosphate Dehydrogenase Deficiency in Erythrocytes
Anna L. Peters 1 and Cornelis J. F. van Noorden 2
(1)
Department of Intensive Care, Academic Medical Center, Meibergdreef 9, Amsterdam, 1105AZ, The Netherlands
(2)
Department of Cell Biology and Histology, Academic Medical Center, Meibergdreef 15, 1105AZ Amsterdam, The Netherlands
Cornelis J. F. van Noorden
Email:
Abstract
Cytochemistry is the discipline that is applied to visualize specific molecules in individual cells and has become an essential tool in life sciences. Immunocytochemistry was developed in the sixties of last century and is the most frequently used cytochemical application. However, metabolic mapping is the oldest cytochemical approach to localize activity of specific enzymes, but in the last decades of the previous century and the first decade of the present century it almost became obsolete. The popularity of this approach revived in the past few years. Metabolism gained interest as player in chronic and complex diseases such as cancer, diabetes, neurodegenerative diseases, and vascular diseases and both enzyme cytochemistry and metabolic mapping have become important tools in life sciences.
In this chapter, we present glucose-6-phosphate dehydrogenase (G6PD) deficiency, the most prevalent enzyme deficiency worldwide, to illustrate recent developments in enzyme cytochemistry or metabolic mapping. The first assays which were developed quantified enzyme activity but were unreliable for single cell evaluation. The field has expanded with the development of cytochemical single cell assays and DNA testing. Still, all assaysfrom the earliest developed tests up to the most recently developed testshave their place in investigations on G6PD activity. Recently, nanoscopy has become available for light and fluorescence microscopy at the nanoscale. For nanoscopy, cytochemistry is an essential tool to visualize intracellular molecular processes. The ultimate goal in the coming years will be nanoscopy of living cells so that the molecular dynamics can be studied. Cytochemistry will undoubtedly play a critical role in these developments.
Key words
Cytochemistry History Metabolic mapping Glucose-6-phosphate dehydrogenase deficiency
Introduction
Cytochemistry is the discipline that is applied to visualize specific molecules in individual cells and has become an essential tool in life sciences. Most users of cytochemical techniques do not realize nowadays that they are performing cytochemistry when they are labeling specific cellular proteins for flow cytometry and cell sorting, because this has become routine. Flow cytometry and cell sorting are undoubtedly the most frequently-used applications of cytochemistry these days. Besides, cytochemistry has been an essential tool in electron microscopical analysis of specific molecules in cells to understand functioning of subcellular compartments. Here, electron dense markers have to be used instead of fluorescence markers. Recently, nanoscopy has become available for light and fluorescence microscopy at the nanoscale using approaches such as STED, SIM, PALM, and STORM []. These techniques do not obey the law of Abbe with respect to the limit of spatial resolution when using light to obtain images because of the wavelength character of light. For nanoscopy, cytochemistry is essential to visualize intracellular molecular processes. The ultimate goal in the coming years will be nanoscopy of living cells so that intracellular molecular dynamics can be studied. Text books will then be rewritten in a similar way as in the past decades on the basis of living cell imaging in the micrometer range using cytochemistry and confocal microscopy.
Cytochemistry as it is applied these days is almost exclusively based on immunocytochemistry to visualize specific proteins. It should be realized that the presence of a protein in (sub)cellular compartments does not automatically mean that this protein exerts the activity the researcher thinks that he/she investigates. It becomes more and more clear that epigenetic and posttranslational modifications of a protein, its microenvironment and/or its moonlighting (i.e., exerting different functions) are essential aspects of cellular proteins. Therefore, tools to visualize activity of proteins in situ are urgently needed to increase our understanding of cellular functions in health and disease. One such cytochemical approach is the visualization of the activity of a specific type of protein, enzymes, using enzyme cytochemistry or metabolic mapping. In fact, it is the oldest cytochemical approach of single molecule cytochemistry since Gomori published his cytochemical study on phosphatase activity in 1939 [].
In this chapter, we present the cytochemical visualization of glucose-6-phosphate dehydrogenase (G6PD) deficiency, the most prevalent enzyme deficiency worldwide, to illustrate recent developments in enzyme cytochemistry or metabolic mapping. G6PD is the key enzyme in the oxidative pentose phosphate pathway (PPP). This pathway is one of the major pathways in which nicotinamide adenine dinucleotide phosphate (NADP+) is converted into its reduced form NADPH, which is essential for the protection against reactive oxygen species (ROS) in cells and in particular erythrocytes (Fig. ].
Fig 1 The NADPH-producing steps of the oxidative pentose phosphate pathway - photo 1
Fig. 1
The NADPH-producing steps of the oxidative pentose phosphate pathway. 6PG 6-phosphogluconate, 6PGD 6-phosphogluconate dehydrogenase, 6PGL 6-phosphogluconolactone, G6P glucose-6-phosphate, G6PD glucose-6-phosphate dehydrogenase, GL gluconolactonase, R5P ribulose-5-phosphate
Early History of G6PD Deficiency
Accounts of G6PD deficiency can be traced back to Pythagoras . The ancient Greek philosopher and mathematician reportedly forbade his followers to eat fava beans ( Vica faba ), possibly because of their potential to induce favism [].
Enzymology
G6PD is the rate-limiting enzyme of the PPP. The enzyme is a monomer of 515 amino acids and has a molecular mass of over 59 kDa [].
The severity of G6PD deficiency is usually measured in four classes in which class I is the most severe form of deficiency and class IV has near to normal function (Table ]. Mutations in the region of the enzyme where NADP+ or G6P bind cause severe loss of G6PD activity and are associated with class I deficiencies. These deficiencies are rare but can induce transfusion dependency as patients in this class usually suffer from chronic non-spherocytic hemolytic anemia . The other classes of deficiency are usually asymptomatic unless patients are in contact with agents that induce hemolytic stress.
Table 1
Classes of G6PD deficiency
WHO class
Severity
Percentage of normal G6PD function, %
Class I
Severe mutations with chronic non-spherocytic hemolytic anemia
Class II
Intermediate
Class III
Mild
1060
Class IV
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