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David R. Witty - Progress in Medicinal Chemistry, Volume 56

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Progress in Medicinal Chemistry, Volume 56, provides a review of eclectic developments in medicinal chemistry. This volume includes chapters covering recent advances in cancer therapeutics, fluorine in medicinal chemistry, a perspective on the next generation of antibacterial agents derived by manipulation of natural products, a potential new era for Chagas Disease drug discovery, and imaging in drug development.
  • Extended, timely reviews of topics in medicinal chemistry
  • Contains targets and technologies relevant to the discovery of tomorrows drugs
  • Presents analyses of successful drug discovery programs

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Copyright Contributors Preface - photo 1
Copyright
Contributors Preface DR Witty B Cox The four chapters in this years - photo 2
Contributors
Preface DR Witty B Cox The four chapters in this years volume of Progress - photo 3
Preface

D.R. Witty; B. Cox

The four chapters in this year's volume of Progress in Medicinal Chemistry illustrate in differing ways the impact of technology on medicinal chemistry research and the widening boundaries of the discipline. The first chapter examines how technological processes have enabled synthetic chemistry advances in a medical research environment. The next three chapters discuss research progress on specific pathways with potential against a variety of medical conditions including Parkinson's disease, pain, immunoinflammatory disorders, cancer and neurodegeneration.

There is a pressing need to improve overall productivity and decrease attrition rates in the pharmaceutical industry. Judicious investments in computational techniques and robotics can have a significant impact on cycle times, cost of goods and probability of success. In , Vasudevan and colleagues describe some of the new chemistry technologies developed and implemented at AbbVie, and their application to the synthesis of novel scaffolds to provide new chemical matter, including the use of automated parallel synthesis to accelerate optimization activities.

As the general demographic increasingly moves towards an older population, Parkinson's disease is becoming an ever more frequently encountered medical condition. All current treatments address symptoms only, and several date back many decades. In , Smith and colleagues describe a new approach, underpinned by genetic analysis of disease association in which the kinase LRRK2 is implicated. Inhibition of this central enzyme has potential to modify the progress of the disease, and the authors describe a structurally enabled approach to inhibitor design, utilizing X-ray crystallography. The design of centrally penetrant kinase inhibitors is challenging, but achieving significant brain levels is key in demonstrating target engagement and validating this mechanism as a treatment for Parkinson's disease.

TRP enzymes have been popular targets for medicinal chemistry for two decades, though with generally disappointing outcomes in the clinic. Recently the case for TRPA1 as a target for pain has been particularly highlighted and the first TRPA1-blocking drugs are now undergoing clinical trials. In , Skerratt reviews the range of compound classes that have been designed as blockers of this ion channel and discusses the potential of channel openers as therapeutics. The impact of recent developments in cryoelectron microscopy is described. This technique is increasingly being applied to complex ion channel assemblies, including TRPA1, to enable the first high-resolution images of bound compound to be determined.

In recent years, interleukin-1 receptor-associated kinase 4, IRAK4, has become an attractive target for many medicinal chemistry programmes. Target inhibition is of potential therapeutic value in areas including autoimmune disorders, cancer, inflammatory diseases and possibly neurodegenerative diseases. In , Genung and Guckian describe results from high-throughput screening efforts which have led, in conjunction with structure-based drug design, to the identification of highly potent and selective small-molecule IRAK4 inhibitors. In vitro and in vivo studies with entities from distinct structural classes have helped elucidate the downstream pharmacological responses associated with IRAK4 inhibition as a proof of concept in disease models, leading to the recent initiation of human clinical trials.

October 2016

Chapter One
Enabling Chemistry Technologies and Parallel SynthesisAccelerators of Drug Discovery Programmes

A. Vasudevan; A.R. Bogdan; H.F. Koolman; Y. Wang; S.W. Djuric Discovery Chemistry and Technology, North Chicago, IL, United States

Abstract

There is a pressing need to improve overall productivity in the pharmaceutical industry. Judicious investments in chemistry technologies can have a significant impact on cycle times, cost of goods and probability of technical success. This perspective describes some of these technologies developed and implemented at AbbVie, and their applications to the synthesis of novel scaffolds and to parallel synthesis.

Keywords

Flow chemistry; Parallel synthesis; LOPHTOR; SWIFT; DRIFT; Phoenix; Library design tool; High-temperature chemistry; Flow photochemistry; Electrochemistry; Hazardous reagents in flow; High-throughput chemistry; Synthetic methods; AbbVie chemistry technology

1 Introduction

Of late, drug discovery has been described (by DiMasi and Faden ) as a race in which several firms pursue investigational drugs with similar chemical structures or with the same mechanism of action before any drug in the class obtains regulatory marketing approval. As a point of illustration, in 2005 a mutation in the JAK2 kinase was found in patients with certain haematologic cancers, spurring drug discovery efforts. These efforts led to the filing of some 150 patent applications within the following 5 years. Given this observation, it is imperative that platform technology introductions in the drug discovery space should be able to accelerate the overall process while maintaining quality.

Seen from this perspective, we believe that the enabling chemistry technologies that are used in the drug discovery process, specifically in the context of support of medicinal chemistry programmes, ought to provide a significant competitive advantage. Paul et al. . In the context of a platform chemistry technology group, this means that the innovative solutions developed must have a significant value/impact on medicinal chemistry progress. This is not to say that one should be afraid of failure when evaluating new technologies, but, in general, one should aim for the highest value opportunities.

In this review, we will cover several areas of enabling chemistry technology that have found use at AbbVie, while also highlighting significant contributions of others in the medicinal chemistry space (although some may be, unfortunately, inadvertently missed). In addition, we will describe the application of these technologies to parallel synthesis.

A common theme for us has been the introduction of technologies that are expected to produce efficiency enhancements based on strong theoretical principles. For example, flow photochemistry is expected to offer improvements over batch photochemical reactions based on BeerLambert law considerations. In a similar vein, we expect that reaction rate accelerations at high temperature will occur based on the fundamentals of the Arrhenius equation. Moreover, in the case of flow chemistry, we feel that the use of segmented/compartmentalized flow reaction methodology will enhance the efficiency of compound library production. In practice, although we find meso-flow protocols useful for intermediate scale-up, we avoid the use of flow chemistry when its implementation is unwarranted .

2 The Evolution of Flow-Based Approaches to Synthesis

The field of organic synthesis has historically been dominated by batch processes, relying on round-bottom flasks and batch reactors to undertake the chemical reactions. Systems like these are the mainstays of pharmaceutical synthesis. In the wider fine chemical industry however, alternative methods such as flow chemistry are well established, in part due to the fact that this industry typically produces relatively simple commodity chemicals. For the pharmaceutical industry, the complexity of chemistry carried out has caused the transition from batch to continuous-flow manufacturing to be relatively slow. Transitioning from batch to continuous flow active pharmaceutical ingredient manufacturing is highly complex as multiple steps are involved, frequently with diverse reaction steps along the way. Additionally, the need for reaction quenching, work-ups, phase separation and solvent changes imposes challenges when dealing with multistep reaction sequences. In recent years, however, a number of new flow technologies have been developed, enabling the pharmaceutical industry to move towards the utilization of more continuous-flow synthesis.

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