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Lillis - R Graph essentials use Rs powerful graphing capabilities to design and create professional-level graphics

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Lillis R Graph essentials use Rs powerful graphing capabilities to design and create professional-level graphics
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R Graph essentials use Rs powerful graphing capabilities to design and create professional-level graphics: summary, description and annotation

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This book is targeted at R programmers who want to learn the graphing capabilities of R. This book will presume that you have working knowledge of R.;Cover; Copyright; Credits; About the Author; About the Reviewers; www.PacktPub.com; Table of Contents; Preface; Chapter 1: Base Graphics in R -- One Step at a Time; Learning basic graphics techniques; Creating and joining points; Creating scatterplots and line plots; Colors in R; Passing parameter values to titles and labels; Including a regression line; Graphing mathematical functions; R provides many options; Creating graphs with several curves; Customizing your axes; Creating axis labels; Creating multiple graphs on the same page; Saving your graphs.

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R Graph Essentials

R Graph Essentials

Copyright 2014 Packt Publishing

All rights reserved. No part of this book may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, without the prior written permission of the publisher, except in the case of brief quotations embedded in critical articles or reviews.

Every effort has been made in the preparation of this book to ensure the accuracy of the information presented. However, the information contained in this book is sold without warranty, either express or implied. Neither the author, nor Packt Publishing, and its dealers and distributors will be held liable for any damages caused or alleged to be caused directly or indirectly by this book.

Packt Publishing has endeavored to provide trademark information about all of the companies and products mentioned in this book by the appropriate use of capitals. However, Packt Publishing cannot guarantee the accuracy of this information.

First published: September 2014

Production reference: 1150914

Published by Packt Publishing Ltd.

Livery Place

35 Livery Street

Birmingham B3 2PB, UK.

ISBN 978-1-78355-455-3

www.packtpub.com

Cover image by Arvind Shetty (<>)

Credits

Author

David Alexander Lillis

Reviewers

Mzabalazo Z. Ngwenya

Donato Teutonico

Tengfei Yin

Commissioning Editor

Pramila Balan

Acquisition Editor

Reshma Raman

Content Development Editor

Akashdeep Kundu

Technical Editor

Rohit Kumar Singh

Copy Editors

Roshni Banerjee

Adithi Shetty

Project Coordinator

Kartik Vedam

Proofreaders

Simran Bhogal

Maria Gould

Ameesha Green

Indexer

Hemangini Bari

Production Coordinator

Arvindkumar Gupta

Cover Work

Arvindkumar Gupta

About the Author

David Alexander Lillis is an experienced researcher and statistician, having worked in research evaluation, agricultural and forestry statistics, and education research and statistics. Currently, David delivers lectures in mathematics, statistics, and research methods at the New Zealand Institute of Sport in New Zealand. He is the owner and Director of Sigma Statistics and Research Limited, a New Zealand-based consultancy specializing in training, software development, data analysis, and statistical modelling using R. David holds an Honor's degree and Master's degree in Physics and Mathematics, and a PhD from Curtin University in Perth, Australia.

I wish to thank my familyAnna (my wife), David (my eight-year old son), and Coral (my mother) for their patience and support while I worked on this book. In addition, I wish to thank the three reviewers for their helpful feedback.

About the Reviewers

Mzabalazo Z. Ngwenya has worked extensively in the field of statistical consulting and currently works as a biometrician. He holds an MSc degree in Mathematical Statistics from the University of Cape Town, and is currently pursuing a PhD. His research interests include statistical computing, machine learning, and spatial statistics. Previously, he was involved in reviewing Learning RStudio for R Statistical Computing , Mark P.J. van der Loo and Edwin de Jonge , Packt Publishing ; R Statistical Application Development by Example Beginner's Guide , Prabhanjan Narayanachar Tattar , Packt Publishing ; and Machine Learning with R , Brett Lantz , Packt Publishing .

Donato Teutonico has several years of experience in the modeling and simulation of drug effects and clinical trials in industrial and academic settings. He received his Pharm.D. degree from the University of Turin, Italy, specializing in Chemical and Pharmaceutical Technology, and his PhD in Pharmaceutical Sciences from Paris-Sud University, France.

He is the author of two R packages for Pharmacometrics: CTS template and panels-for-pharmacometrics; both are available on Google code. He is also the author of Instant R Starter , Packt Publishing .

Tengfei Yin earned his BS degree in Biological Science and Biotechnology from Nankai University in China and a PhD in Molecular, Cellular and Developmental Biology (MCDB) with a focus on computational biology and bioinformatics from Iowa State University. His research interests include information visualization, high-throughput biological data analysis, data mining, machine learning, and applied statistical genetics. He has developed and maintained several software packages in R and Bioconductor.

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Preface

Reading this book will enable you to learn very quickly how to create wonderful graphics using R. Since R is based on syntax, the time required to master R can be considerable. However, creating high quality and attractive graphics is made easy through the syntax and step-by-step explanations of this book. By reading this book, you will learn how to introduce attractive color schemes, create headings and legends, design your own axes and axes labels, create mathematical expressions on your graphs, and much more.

What this book covers

, Base Graphics in R One Step at a Time , introduces the basic components of a graph (headings, symbols, lines, colors, axes, labels, legends, and so on) and outlines how to use the R syntax to create these components.

, Advanced Functions in Base Graphics , covers the techniques required to create professional-level graphs in R, including bar charts, histograms, boxplots, pie charts, and dotcharts. It also covers regression lines, smoothers, and error bars.

, Mastering the qplot Function , explains how to use qplot to create a wide range of basic but attractive graphs.

, Advanced Functions in Base Graphics , but this time using the many special and attractive features of ggplot.

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