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Chikako Nishigori - DNA Repair Disorders

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Chikako Nishigori DNA Repair Disorders

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This book focuses on the clinical aspects of DNA repair disorders. Nucleotide excision repair is an important pathway for humans, as it is involved in biologically fundamental functions. This work presents clinical features together with the pathogenesis of DNA repair disorders such as Xertoderma Pigmentosum (XP). Studies on animal models are included as well. Clinical feature characteristics of each clinical subtype of XP are depicted according to the genotype, giving accurate and detailed information about the clinical features in terms of gene alterations, change of protein structure, and dysfunction in some of the repair pathways. This book is unique in that it provides detailed information on clinical features from more than 100 patients with XP-A, which is characterized by very severe manifestation of skin photosensitivity and neurological dysfunction. It will give readers important knowledge for understanding the concept and molecular mechanisms of DNA repair disorders. It also describes how to treat and care for patients with XP based on vast experience in clinical practice. DNA Repair Disorders will be a useful resource not only for physicians and basic scientists who are interested in and/or take care of patients with DNA repair disorders, but also dermatologists, neurologists, and researchers in the field of radiation biology and photobiology.

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Editors Chikako Nishigori and Kaoru Sugasawa DNA Repair Disorders - photo 1
Editors
Chikako Nishigori and Kaoru Sugasawa
DNA Repair Disorders
Editors Chikako Nishigori Department of Dermatology Graduate School of - photo 2
Editors
Chikako Nishigori
Department of Dermatology, Graduate School of Medicine, Kobe University, Kobe, Japan
Kaoru Sugasawa
Biosignal Research Center, Kobe University, Kobe, Japan
ISBN 978-981-10-6721-1 e-ISBN 978-981-10-6722-8
https://doi.org/10.1007/978-981-10-6722-8
Library of Congress Control Number: 2018959112
Springer Nature Singapore Pte Ltd. 2019
This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed.
The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use.
The publisher, the authors, and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, express or implied, with respect to the material contained herein or for any errors or omissions that may have been made. The publisher remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

This Springer imprint is published by the registered company Springer Nature Singapore Pte Ltd.

The registered company address is: 152 Beach Road, #21-01/04 Gateway East, Singapore 189721, Singapore

Preface

Xeroderma pigmentosum (XP) is an autosomal recessive hereditary photosensitive disease, in which patients display extreme hypersensitivity to ultraviolet radiation (UVR) because of the deficiency in the ability to repair the UVR-induced DNA lesions. Although the existence of the disease had been known since the first case report on XP by a dermatologist, Kaposi, in 1883, the cause of XP was at length discovered in 1968, 85 years after the first case report. This year marks the 50th anniversary of the discovery of the cause of XP, a deficiency in nucleotide excision repair (NER), by James E. Cleaver. NER is an indispensable DNA repair mechanism for all living things on earth to remove various forms of DNA lesions from their genomic DNA, including UVR-induced DNA lesions, such as cyclobutane pyrimidine dimers and (6-4)photoproducts. In this sense, NER involves in an essential mechanism for living things and recently it has been shown that NER is closely involved in the biologically fundamental role such as transcription and replication. Therefore the deficiency in NER results in a disastrous condition. In this book we focused on the clinical aspects of DNA repair disorders. We would like to delineate the outcome of the deficiency of DNA repair so that we will come to know the essence of the DNA repair mechanisms. The authors are experts in this subject, and the publication of this book is timely because a Nobel Prize was given to the scientists who discovered the mechanisms of the NER, and the readers may be interested in what will become of individuals who are deficient in DNA repair.

Chikako Nishigori
Kaoru Sugasawa
Kobe, Japan Kobe, Japan
Contents
Kaoru Sugasawa
Chaowan Guo and Tomoo Ogi
Fumio Kanda , Takehiro Ueda and Chikako Nishigori
Takeshi Fujita and Daisuke Yamashita
Chikako Nishigori and Eiji Nakano
Shinichi Moriwaki
Masaharu Hayashi
Hiva Fassihi , Isabel Garrood , Natalie Chandler , Shehla Mohammed , Alan R. Lehmann and Robert Sarkany
Masaya Kubota
Donata Orioli and Miria Stefanini
Hideo Kaneko
Chikahide Masutani and Fumio Hanaoka
Junya Kobayashi
Deborah Tamura , Ryusuke Ono , John J. DiGiovanna and Kenneth H. Kraemer
Springer Nature Singapore Pte Ltd. 2019
Chikako Nishigori and Kaoru Sugasawa (eds.) DNA Repair Disorders https://doi.org/10.1007/978-981-10-6722-8_1
1. Molecular Mechanism of DNA Damage Recognition for Global Genomic Nucleotide Excision Repair: A Defense System Against UV-Induced Skin Cancer
Kaoru Sugasawa
(1)
Biosignal Research Center, Kobe University, Kobe, Hyogo, Japan
Kaoru Sugasawa
Email:
Abstract

Nucleotide excision repair (NER) is a versatile DNA repair pathway responsible for removal of ultraviolet light (UV)-induced DNA photolesions from the genome. In mammals, NER operating throughout the genome decreases the risk of UV-induced mutagenesis arising due to DNA translesion synthesis across photolesions on template DNA strands and thereby contributes to suppression of skin cancer. Lesion recognition for global genomic NER relies on multiple xeroderma pigmentosum (XP)-related protein factors, XPC, UV-DDB, TFIIH, and XPA, each of which probes for a different aspect of abnormal DNA structure. A combination of diverse strategies is likely required to achieve the broad substrate specificity, efficiency, and accuracy of this DNA repair system. To regulate this elaborate system in vivo, post-translational protein modifications, such as ubiquitination, and higher-order chromatin structures also play important roles.

Keywords
Nucleotide excision repair Xeroderma pigmentosum DNA damage recognition XPC UV-DDB Transcription factor IIH (TFIIH) XPA Ubiquitination Chromatin Histone
1.1 Introduction

Among the complex clinical symptoms associated with xeroderma pigmentosum (XP), the predisposition to skin cancer is an important diagnostic hallmark [].

NER is an important DNA repair pathway that can remove various types of structurally unrelated DNA lesions from genomic DNA []. According to this widely accepted model for skin carcinogenesis, global coverage of the genome by NER functions as a defense system against UV-induced skin cancer by decreasing the frequency of collisions between DNA replication forks and photolesions. Sustained DNA lesions block transcriptional elongation but can be removed from transcribed DNA strands by a specialized NER sub-pathway called transcription-coupled NER, which is reviewed in another chapter of this book.

By the end of the twentieth century, the causative genes for all known genetic complementation groups of XP had been identified; among them, seven groups (XP-A through XP-G) are associated with defective NER. Extensive studies of these gene products have contributed to our understanding of the basic molecular mechanisms of NER []. It has been also revealed that NER is subject to elaborate regulation, which involves post-translational protein modifications and alteration of chromatin structures. This chapter reviews our current knowledge on the mechanism and regulation of mammalian global genomic NER (GG-NER), especially the DNA damage recognition step.

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